PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019489m
Common NameCARUB_v10019489mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 292aa    MW: 33392.6 Da    PI: 6.4089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019489mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.44.4e-26102163159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+++gse+pr+YYrCt++   gC + k+v++s+ dp++ e++Y  +H+++
  Carubv10019489m 102 LDDGYCWRKYGQKDIHGSENPRGYYRCTHRftrGCLAVKQVQKSDADPSCYEVKYLKSHTCN 163
                      59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-2492163IPR003657WRKY domain
PROSITE profilePS5081121.97697165IPR003657WRKY domain
SuperFamilySSF1182903.79E-22101164IPR003657WRKY domain
SMARTSM007741.8E-33102164IPR003657WRKY domain
PfamPF031061.2E-21103162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKEETTLVEE KLGMKDDLEH GKELANRLMK DLKNPFSSKE SNKSLISGIL RSYENAIVML  60
GLDQQTLKRR SPERMDQRYK KRKNGPRKLT YVLEQDKKEL QLDDGYCWRK YGQKDIHGSE  120
NPRGYYRCTH RFTRGCLAVK QVQKSDADPS CYEVKYLKSH TCNVNLSTTK SSVVSVPKEE  180
PNNVHELHVA EQSVDIIKHM KFEETMLSLD DLENKNEIFR TFSFSNLETE NITGRRNLME  240
NLSPTTTSES GITNELLSAS SASVVNSPAD DSCFTSLENI LDLSYDDWSL I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16782KRRSPERMDQRYKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293174.10.0hypothetical protein CARUB_v10019489mg
SwissprotQ9SKD98e-86WRK46_ARATH; Probable WRKY transcription factor 46
TrEMBLR0FTA90.0R0FTA9_9BRAS; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50021451e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-80WRKY DNA-binding protein 46