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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019489m | ||||||||
Common Name | CARUB_v10019489mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 292aa MW: 33392.6 Da PI: 6.4089 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.4 | 4.4e-26 | 102 | 163 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+++gse+pr+YYrCt++ gC + k+v++s+ dp++ e++Y +H+++ Carubv10019489m 102 LDDGYCWRKYGQKDIHGSENPRGYYRCTHRftrGCLAVKQVQKSDADPSCYEVKYLKSHTCN 163 59***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-24 | 92 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.976 | 97 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-22 | 101 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-33 | 102 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-21 | 103 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MKEETTLVEE KLGMKDDLEH GKELANRLMK DLKNPFSSKE SNKSLISGIL RSYENAIVML 60 GLDQQTLKRR SPERMDQRYK KRKNGPRKLT YVLEQDKKEL QLDDGYCWRK YGQKDIHGSE 120 NPRGYYRCTH RFTRGCLAVK QVQKSDADPS CYEVKYLKSH TCNVNLSTTK SSVVSVPKEE 180 PNNVHELHVA EQSVDIIKHM KFEETMLSLD DLENKNEIFR TFSFSNLETE NITGRRNLME 240 NLSPTTTSES GITNELLSAS SASVVNSPAD DSCFTSLENI LDLSYDDWSL I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 82 | KRRSPERMDQRYKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293174.1 | 0.0 | hypothetical protein CARUB_v10019489mg | ||||
Swissprot | Q9SKD9 | 8e-86 | WRK46_ARATH; Probable WRKY transcription factor 46 | ||||
TrEMBL | R0FTA9 | 0.0 | R0FTA9_9BRAS; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_5002145 | 1e-121 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4888 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 9e-80 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019489m |
Entrez Gene | 17885925 |